FastQCFastQC Report
Wed 8 May 2024
EGAF00007960837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463564
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28720.6195476784219655No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22390.4829969540343944No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG15810.34105323105331736No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13380.28863328472443933No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13010.2806516468060505No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12200.2631783313630912No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG11770.2539023737822609No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11290.24354781648272947No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG9660.20838546565307056No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA8900.19199074992881243No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8870.1913435900975917No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8680.18724491116652717No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7940.1712816353297495No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7670.16545719684876306No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7230.15596551932419256No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG7120.15359259994304994No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6930.14949392101198541No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6440.13892364376871372No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGCCG6380.13762932410627227No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5800.12511756736933843No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA5570.12015600866331294No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5490.11843024911339103No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4910.10591849237645719No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4860.10483989265775599No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC4730.1020355333891329No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4690.10117265361417195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)