FastQCFastQC Report
Wed 8 May 2024
EGAF00007960838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478853
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA16720.3491676986465575No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14530.30343341275923924No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA13970.2917388008428474No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13670.28547383017335176No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13340.27858236243690654No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11840.24725750908942828No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10610.2215711293444961No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG9750.2036115467586086No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9560.19964373200126134No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9100.19003744364136801No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8710.18189298177102367No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT7440.1553712726034921No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7370.1539094461139431No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAG6640.1386646841515037No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6510.13594986352805558No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6500.1357410311724057No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6260.1307290546368092No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6140.12822306636901096No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5990.12509058103426313No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5710.11924327507606719No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5230.10921932200487414No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG5130.10713099844837559No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4950.10337201604667821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)