FastQCFastQC Report
Wed 8 May 2024
EGAF00007960839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478853
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30360.6340150317529597No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16870.3523001839813053No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13700.28610032724030127No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG13470.28129718306035467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13350.2787911947925564No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12330.25749029451627115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11650.24328969433208103No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10270.21447082925240107No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9560.19964373200126134No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC9430.19692891137781324No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9160.19129043777526716No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8980.18753145537356977No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7980.16664821980858427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7870.16435106389643586No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7410.15474477553654253No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7270.15182112255744457No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGCCG6580.1374116900176046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6500.1357410311724057No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6010.12550824574556282No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA5880.12279342512211472No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5570.11631962209696922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.11464896325177037No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5250.10963698671617385No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC4960.10358084840232806No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4850.10128369249017967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)