FastQCFastQC Report
Wed 8 May 2024
EGAF00007960840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466428
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA16070.3445333470546365No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13480.28900494824495954No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA13370.2866465992607648No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13220.2834306688277719No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12700.27228210999339664No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11730.25148575986004273No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10010.21460975756172446No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9230.19788691931016147No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG9180.19681494249916384No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9090.19488538423936813No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8130.17430342946821376No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7430.15929575411424698No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT6480.13892819470529214No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6310.1352834735479002No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6300.1350690781857007No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6160.13206754311490734No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAG6120.13120996166610924No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5970.12799403123311637No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5780.12392051935132539No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5630.12070458891833252No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5180.1110567976193539No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG4970.10655449501316389No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4770.10226658776917338No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4750.10183779704477432No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4730.10140900632037528No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4710.10098021559597622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)