FastQCFastQC Report
Wed 31 May 2023
EGAF00007960841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466428
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28320.6071676657490546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21830.4680250756815629No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16300.34946444038522556No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13170.2823586920167743No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12990.27849957549718285No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG12340.2645638769542137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11710.2510569691356437No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11680.25041378304904505No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9710.2081778966957387No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG9710.2081778966957387No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC8940.19166945380637526No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8520.1826648485939952No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8260.17709056917680757No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8060.17280266193281707No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8000.17151628975961994No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6900.14793279991767216No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6810.14600324165787645No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6460.1384994039808931No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGCCG6340.1359266596344988No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5900.1264932636977197No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA5470.11727426312314011No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5230.11212877443035152No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5170.11084240225715439No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5010.10741207646196198No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4730.10140900632037528No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4710.10098021559597622No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4690.10055142487157719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)