FastQCFastQC Report
Wed 8 May 2024
EGAF00007960842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463353
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23630.5099783534367965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG22280.4808428994740511No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG18640.4022850828633892No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16920.36516435633307653No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16720.36084799278304014No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA14900.3215690844777092No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG13370.28854890331993105No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13310.28725399425492015No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12270.264808903794731No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11570.24970163136960374No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC11490.24797508594958917No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11140.24042144973702556No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10460.22574581366690188No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG10440.22531417731189826No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10180.219702904696851No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA10080.2175447229218328No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT9230.19920017783417826No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG9220.19898435965667646No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8860.191214905266611No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8560.18474035994155644No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC8410.18150308727902917No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC8370.1806398145690219No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8200.17697090555149098No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7540.16272690583637098No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7300.15754726957632734No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7270.1568998150438219No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTG7120.15366254238129462No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT7100.15323090602629097No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG6640.1433032698612073No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6260.13510217911613823No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6250.1348863609386364No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGG6210.13402308822862916No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6170.13315981551862188No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCAT5940.12819599743608004No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5820.12560617930605825No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5820.12560617930605825No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5610.12107399757852004No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5480.11826836127099641No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGAC5370.11589436131847641No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5340.11524690678597095No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5220.11265708865594913No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5180.11179381594594187No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG4770.10294527066836731No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4760.1027294524908655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)