FastQCFastQC Report
Wed 8 May 2024
EGAF00007960843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463353
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG53181.1477210679546694No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21850.4715627178414729No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG20390.4400532639262074No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC18570.4007743556208765No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT17690.3817823560007165No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG17280.37293381072314197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13430.2898438123849419No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT13350.2881172669649274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12770.2755998126698219No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12760.2753839944923201No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT12190.2630823583747165No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG11870.25617617669465825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11120.23998981338202188No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11000.23739999525200012No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10990.23718417707449826No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9670.20869617764425827No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9660.20848035946675644No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC9550.20610635951423645No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC9350.20178999596420008No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9130.1970419960591601No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGGAC9050.19531545063914552No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8780.18948835984659645No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG8250.17804999643900007No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7900.17049636022643644No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7740.16704326938640734No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7690.16596417849889825No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7670.1655325421438946No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTAAA6790.1465405425237346No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6390.13790781542366187No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC6370.13747617906865822No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC6280.13553381547114188No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6230.13445472458363278No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6060.13078581556610186No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACCTG5990.12927508832358914No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5920.12776436108107642No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5800.1251745429510546No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5610.12107399757852004No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5510.11891581580350187No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGACC5500.11869999762600006No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5490.11848417944849822No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.11783672491599277No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5450.11762090673849096No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5390.11632599767348005No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5180.11179381594594187No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4930.10639836150839642No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC4910.10596672515339275No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATCAC4820.10402436155587641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)