FastQCFastQC Report
Wed 8 May 2024
EGAF00007960844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450672
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23450.5203340788866404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20500.4548762736535662No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG16700.37055774487875887No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16680.3701139631483651No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15970.35435971171938796No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA15660.34748109489828527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13290.29489295984662905No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG12680.2813576170696205No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12360.27425710938332093No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11450.25406504065040647No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC11050.24518940604253206No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10820.2400859161430042No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10210.22655057336599566No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG9840.21834061135371177No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9800.21745304789292436No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG9700.21523413924095575No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA9540.21168388539780594No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8700.1930450527212696No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC8470.18794156282174174No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8140.18061916427024532No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8090.17950970994426102No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC8080.17928781907906416No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7490.16619625803244933No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT7420.16464302197607128No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7030.15598927823339367No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7030.15598927823339367No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6940.15399226044662193No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG6840.15177335179465332No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTG6530.1448947349735506No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG6020.13357830084851066No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6000.13313451911811694No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6000.13313451911811694No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCAT5820.12914048354457344No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5740.12736535662299855No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGG5700.12647779316221108No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5350.11871161288032094No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5350.11871161288032094No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5310.11782404941953349No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5240.11627081336315548No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGAC5150.11427379557638372No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5020.11138921432882452No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG4910.10894841481165904No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGAC4830.10717328789008414No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4800.10650761529449357No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG4610.10229168885575318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)