FastQCFastQC Report
Wed 8 May 2024
EGAF00007960846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465520
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA24550.5273672452311393No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG21280.4571232170476027No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG18400.3952569169960474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16790.3606719367588933No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA15860.3406942773672452No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15630.33575356590479466No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14350.30825743254854787No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG13710.2945093658704245No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13260.28484275648736895No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12080.259494758549579No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11190.24037635332531362No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC10860.23328750644440624No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10540.22641347310534457No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG10350.2223320158102767No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10300.2212579481010483No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG9900.21266540642722118No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA9800.21051727100876438No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC9480.2036432376697027No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT9240.19848771266540643No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC8750.18796184911496822No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8500.18259151056882625No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8020.17228046056023372No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7840.1684138168070115No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT7650.16433235951194364No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7570.16261385117717822No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG7190.15445093658704245No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTG7140.15337686887781407No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7130.15316205533596838No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6810.1462880219969067No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6480.1391991751159993No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6320.13576215844646847No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGG6220.13361402302801167No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6030.1295325657329438No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCAT5800.12459185427049321No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5750.12351778656126483No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5730.12308815947757346No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5670.12179927822649941No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGAC5480.11771782093143152No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5430.11664375322220312No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5160.11084378759236982No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG4950.10633270321361059No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4770.10246605946038839No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4750.10203643237669702No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4700.10096236466746863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)