FastQCFastQC Report
Wed 8 May 2024
EGAF00007960847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465520
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG56291.2091854270493212No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20940.4498195566248496No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG20110.43199003265165836No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC18810.40406427221172025No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT17780.3819384774016154No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16830.361531190926276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13950.29966489087472076No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT13750.2953686200378072No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13740.2951538064959615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13050.2803316721086097No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG12100.2599243856332703No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT11660.2504725897920605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11560.2483244543736037No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10850.2330726929025606No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT10720.23028011685856678No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC10530.22619865956349888No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC10220.21953943976628287No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9410.20213954287678296No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9400.20192472933493727No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9160.19676920433064102No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGGAC9000.19333218766111016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8930.1918284928681904No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG8690.18667296786389415No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7730.16605086784670905No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7260.15595463137996218No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7220.1550953772125795No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7110.152732428252277No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTAAA6790.14585839491321534No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6630.14242137824368448No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6520.14005842928338202No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC6240.13404365011170305No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6090.13082144698401788No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6000.12888812510740677No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACCTG5940.1275992438563327No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5860.12588073552156728No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5600.12029558343357966No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5520.11857707509881424No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5500.11814744801512288No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.11728819384774017No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGACC5340.11471043134559201No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5290.11363636363636363No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5240.11256229592713524No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5160.11084378759236982No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5090.10934009279945008No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5070.10891046571575873No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4970.10676233029730195No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATCAC4970.10676233029730195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)