FastQCFastQC Report
Wed 8 May 2024
EGAF00007960848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454454
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA23250.5116029345104235No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG21290.4684742570205125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG18240.40136075378366126No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16140.35515145647304236No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA15880.3494303053774419No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15440.33974835736950276No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14160.311582690437316No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG12690.27923618231988273No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12400.2728548984055592No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11550.25415113520840393No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC11080.2438090543817416No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG10770.2369876819216026No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10180.22400506982004778No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10110.22246475990969383No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9980.2196041843618936No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA9740.2143231218121086No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG9410.2070616608061542No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8920.19627949143367646No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC8780.19319887161296853No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8430.18549732206119873No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8030.17669555114489036No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7770.1709744000492899No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC7770.1709744000492899No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7500.16503320468078178No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7220.15887196503936593No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6920.15227063685213466No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTG6790.14941006130433443No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG6740.14830983993979588No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6530.14368891020873398No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6080.13378691792788708No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6030.13268669656334853No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGG5830.12828581110519438No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5830.12828581110519438No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5770.12696554546774813No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCAT5680.12498514701157874No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5430.119484040188886No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5410.11904395164307059No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGAC5300.11662346464108579No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC5290.11640342036817808No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5250.11552324327654725No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5150.11332280054747014No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5030.11068226927257764No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4960.10914195936222368No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4700.10342080826662324No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4630.10188049835626928No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGAC4600.10122036553754615No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG4590.10100032126463844No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4550.1001201441730076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)