FastQCFastQC Report
Wed 8 May 2024
EGAF00007960849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454454
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG54281.1944003133430445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22110.48651788739894464No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21530.4737553195702976No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG19530.4297464649887558No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC18110.39850017823586104No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT17190.3782561051283518No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16160.3555915450188578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14020.30850207061660806No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12740.2803364036844213No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT12580.27681569531789796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12510.275275385407544No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG12280.2702143671306667No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT12000.2640531274892508No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10800.23764781474032576No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT10580.23280684073635616No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC10130.22290484845550926No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9790.21542334317664713No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC9610.21146254626430838No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9450.20794183789778503No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9170.2017805982563692No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9070.19958015552729208No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGGAC8630.18989820751935288No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8430.18549732206119873No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7910.17405501986999783No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG7580.16679355886404346No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7220.15887196503936593No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7040.15491116812702715No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6560.1443490430274571No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTAAA6220.13686753774859503No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6180.13598736065696418No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC5930.13048625383427145No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5890.12960607674264063No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5840.12850585537810208No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5820.12806576683228665No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACCTG5700.12542523555739415No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5610.12344483710122475No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5370.11816377455143975No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5320.1170635531869012No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5260.11574328754945495No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGACC5250.11552324327654725No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5180.11398293336619326No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5150.11332280054747014No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5140.11310275627456244No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5130.11288271200165473No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5050.11112235781839305No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5050.11112235781839305No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATCAC5030.11068226927257764No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4750.10452102963116178No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGAAC4580.10078027699173073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)