FastQCFastQC Report
Wed 8 May 2024
EGAF00007960850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489367
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16020.3273616733453625No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14330.2928272646091788No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11920.2435799716776979No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10400.212519438376515No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8980.18350236121356772No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8000.16347649105885767No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA7810.15959392439620979No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7560.1544852840506205No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6880.1405897823106176No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6780.13854632617238188No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6410.1309855384609097No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6320.12914642793649755No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5740.11729438233473038No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5590.1142291981273768No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5340.1091205577817875No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5060.10339888059472746No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4920.10053804200119745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)