FastQCFastQC Report
Wed 8 May 2024
EGAF00007960851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489367
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32430.6626928256298442No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16900.3453440873618368No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15650.3198008856338903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13670.27934045409682307No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12280.25093641377534653No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9030.1845240892826856No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT8160.16674602088003482No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8110.16572429281091697No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC6210.12689862618443826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.11974652970061324No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5850.11954218408678967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5840.1193378384729661No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5580.11402485251355322No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5400.11034663146472894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5320.10871186655414035No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5310.10850752094031678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)