FastQCFastQC Report
Wed 8 May 2024
EGAF00007960852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472550
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16430.3476880753359433No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13740.29076288223468416No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11490.24314887313511796No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10090.2135223785842768No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9330.19743942439953444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8100.17141043275843826No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA7850.16611998730293093No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7260.15363453602793356No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6830.1445349698444609No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6510.13776319966141148No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6240.13204951856946356No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG5820.12316157020421119No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5750.12168024547666914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5220.11046450111099354No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5030.10644376256480795No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4930.10432758438260502No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4740.10030684583641943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)