FastQCFastQC Report
Wed 8 May 2024
EGAF00007960853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472550
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31870.6744259866680775No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23510.49751349063591155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17870.37816104115966565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14110.2985927415088351No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13330.28208655168765207No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG11770.24907417204528623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8830.18685853348851975No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8220.1739498465770818No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT8170.17289175748598032No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5780.12231509893133002No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5780.12231509893133002No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5230.11067611892921383No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5220.11046450111099354No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5090.10771346947412973No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4900.10369273092794412No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4860.10284625965506296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)