FastQCFastQC Report
Wed 8 May 2024
EGAF00007960854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490869
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16410.3343050793592588No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13730.27970802800747246No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11770.2397788411979571No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10510.21411007824898293No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9240.18823759495914388No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA8260.1682730015543862No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8240.16786556087265644No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7340.14953073019481775No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6880.14015959451503354No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6490.13221450122130343No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6460.1316033401987088No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6320.12875125542660057No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5780.11775035701989736No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5750.11713919599730274No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5500.11204618747568088No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5440.11082386543049164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5400.11000898406703213No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5150.10491597554541027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)