FastQCFastQC Report
Wed 8 May 2024
EGAF00007960855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490869
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32230.65659065860749No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18220.37117846105580105No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14770.3008949434574194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13810.28133779073439147No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12100.24650161244649796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9350.1904785187086575No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT8750.17825529825676506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8130.16562463712314282No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC6220.12671405201795183No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5970.12162104349632999No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5870.11958384008768123No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5840.1189726790650866No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5830.11876895872422173No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5470.11143502645308626No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.11123130611222139No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5310.10817550099924828No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC5020.10226761111416692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)