FastQCFastQC Report
Wed 8 May 2024
EGAF00007960856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476563
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15520.32566523208893683No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13350.2801308536332028No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA12080.2534817012651003No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10220.21445223401732827No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9420.19766536638387788No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7730.162203108508214No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7370.15464901807316137No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA7200.15108180870105317No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6550.13744247874887475No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6440.13513428444927533No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6410.13450477691302093No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6380.13387526937676655No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5670.11897692435207936No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5400.11331135652578987No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5180.10869496792659103No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4820.10114087749153837No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4800.1007212058007021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)