FastQCFastQC Report
Wed 8 May 2024
EGAF00007960857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476563
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30270.6351731040806776No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22780.4780060558624987No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18060.37896353682514167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14980.31433409643635785No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13550.2843275705415654No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12250.2570489106372085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9110.1911604551759159No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8140.17080637817035732No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT7640.16031458589945086No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC6300.13219658261342151No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5850.12275396956960569No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5410.113521192371208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5400.11331135652578987No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5170.10848513208117289No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4860.10198022087321089No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4830.1013507133369565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)