FastQCFastQC Report
Wed 8 May 2024
EGAF00007960864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454269
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14210.3128102511947767No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6750.14859037266465464No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4720.1039031939225437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)