FastQCFastQC Report
Wed 8 May 2024
EGAF00007960866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453926
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT21200.46703647731127984No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14660.3229601300652529No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14090.3104030172318836No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13280.2925586989949904No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC12110.2667835726528112No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11660.2568700625212039No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10020.22074082559712377No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG9670.2130303177169847No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9550.21038671501522277No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9320.20531980983684567No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG8480.18681459092451191No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7630.16808907178703136No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6930.15266805602675326No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6880.1515665549010191No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6730.14826205152381666No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6610.1456184488220547No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG6150.1354846384653005No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT5960.13129893418751074No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5710.12579142855883998No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5360.11808092067870093No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5230.11521701775179215No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT4830.10640500874591893No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4770.10508320739503794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)