FastQCFastQC Report
Wed 8 May 2024
EGAF00007960867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453926
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31080.684693099756348No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG21300.46923947956274814No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14630.3222992293898124No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13410.2954226019218992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13080.2881526944920538No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13010.2866105929160259No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12370.2725113785066288No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG11920.26259786837502147No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT9700.21369121839242522No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9490.20906491366434174No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9110.20069350510876222No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC8970.1976093019567066No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7840.1727153765151148No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7100.15641315985424936No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7070.1557522591788089No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT6340.1396703427430903No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC6280.1383485413922093No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5510.1213854240559034No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT5390.11874182135414141No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5240.11543731797693897No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4970.10948921189797456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4870.10728620964650627No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4780.1053035076201848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)