FastQCFastQC Report
Wed 8 May 2024
EGAF00007960868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440919
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT21120.47899954413395657No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14370.32591020119341646No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13460.3052714897747659No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13090.29687992579135847No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC11740.26626205720325047No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11390.2583240912730002No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9670.21931465870148487No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9570.21704666843569906No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG9260.21001589861176315No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG8470.19209877551205548No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG7990.18121242223628375No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7570.1716868631199835No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6980.15830572055184738No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6970.1580789215252688No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6810.15445013710001157No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6390.14492457798371128No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT6040.13698661205346108No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5830.13222383249531092No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5770.13086303833583945No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG5660.1283682490434751No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5340.1211106801929606No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG4570.10364715514641011No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4450.10092556682746719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)