FastQCFastQC Report
Wed 8 May 2024
EGAF00007960869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440919
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29660.6726859128320621No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21860.49578267210077137No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG20770.4710615782037063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14170.3213742206618449No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14050.318652632342902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12810.29052955304715833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12750.2891687588876869No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11770.26694245428298624No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG10950.24834493410354283No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9170.20797470737255594No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT9140.20729431029282022No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC8300.1882431920602197No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7970.1807588241831266No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7680.17418165241234784No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7140.16193450497710463No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7020.1592129166581617No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT6020.13653301400030393No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC5920.13426502373451815No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5290.11997668506006773No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT4730.10727593957166735No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4680.10614194443877448No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4500.10205956196036006No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA4440.1006987678008886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)