FastQCFastQC Report
Wed 8 May 2024
EGAF00007960870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454949
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT21700.47697654022758595No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15140.3327845538730715No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13980.3072871904323342No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13360.2936592892829746No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC12110.26618368212700766No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11140.2448626109739773No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10410.22881685639489263No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9700.21321071153030338No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9360.20573734638388042No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG9320.20485812695488942No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG8070.17738251979892253No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7740.17012895950974724No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7560.166172472079288No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA7170.1576000826466263No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT6780.14902769321396464No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6590.14485140092625767No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6110.13430076777836636No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5940.13056408520515486No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5920.1301244754906594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5710.12550857348845695No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG5670.12462935405946601No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT4810.10572613633616076No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC4640.10198945376294925No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG4580.10067062461946286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)