FastQCFastQC Report
Wed 8 May 2024
EGAF00007960871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454949
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31370.6895278371861461No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG21740.4778557596565769No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14090.30970504386205927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13870.3048693370026091No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13720.30157226414389304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13370.29387909414022234No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG11810.25958953640957555No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11590.2547538295501254No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT9540.20969383381433962No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9500.20881461438534868No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9230.20287988323965983No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC8680.1907906160910344No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7800.17144778865323365No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7750.17034876436699498No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7430.16331500893506745No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT6910.1518851563581852No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5920.1301244754906594No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC5770.12682740263194336No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT5400.11869462291377714No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5100.1121004771963451No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5080.11166086748184961No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4830.10616574605065623No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC4660.10242906347744471No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4660.10242906347744471No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4610.10133003919120605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)