FastQCFastQC Report
Wed 8 May 2024
EGAF00007960872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444046
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT21310.47990523504321625No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14360.32338991906243947No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13290.2992933164582048No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12760.28735761610283617No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC12310.27722353089544777No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11060.24907329420825772No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10200.22970593136747092No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9440.2125905874616594No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9210.2074109439112164No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG9110.20515892497624122No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG8470.1907460037923999No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7490.16867621822964288No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7130.16056895006373212No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6870.1547137008327966No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6820.153587691365309No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6710.15111047053683627No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6240.1405259815424528No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT5960.13422032852452223No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG5730.12904068497407928No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5500.12386104142363628No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5370.12093341680816852No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGT5160.1162041770447206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)