FastQCFastQC Report
Wed 8 May 2024
EGAF00007960873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444046
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29490.664120383924188No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21120.4756263990667633No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG21100.47517599527976834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14720.3314971872283502No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13990.31505744900303123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13080.29456407669475687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12490.2812771649784031No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG11760.26483742675308414No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11580.2607837926701288No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9380.21123937610067425No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT9270.20876215527220154No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG8930.20110529089328583No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC8740.19682645491683293No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7460.16800061254915033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7340.16529818982718006No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG6960.1567405178742743No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC6090.13714795313999No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT6010.13534633799200982No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT5750.1294910887610743No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5550.12498705089112389No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA4510.10156605396738176No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4470.10066524639339167No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4470.10066524639339167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)