FastQCFastQC Report
Wed 8 May 2024
EGAF00007960883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466780
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17470.37426624962509103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13880.29735635631346674No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5890.12618364111572905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5340.11440078837996487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.11332961994944084No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5100.10925917991344959No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5000.10711684305240157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)