FastQCFastQC Report
Wed 8 May 2024
EGAF00007960884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454681
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13400.2947121168467563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7740.17022923764133535No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6990.15373415647453928No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5790.12734202660766558No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5470.12030412530983262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)