FastQCFastQC Report
Wed 8 May 2024
EGAF00007960885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454681
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23270.5117873850017924No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17050.3749881785251638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13150.28921375645782427No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6030.13262045258104033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5810.12778189543878016No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4660.10248943764969286No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4650.10226950323413558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)