FastQCFastQC Report
Wed 8 May 2024
EGAF00007960886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468742
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13710.2924849917438591No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8460.1804830802445695No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7790.1661895029675173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5740.12245542323922327No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5270.11242858544785832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)