FastQCFastQC Report
Wed 8 May 2024
EGAF00007960887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468742
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19030.4059802620631392No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13960.29781841610096815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5930.12650882575062614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5840.1245887929820669No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5840.1245887929820669No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5320.11349527031928011No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4920.10496179134790568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)