FastQCFastQC Report
Wed 8 May 2024
EGAF00007960889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457481
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22150.48417311320032963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18890.4129133231762631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13250.2896295146683687No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5730.12525110332450964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5700.12459533838563787No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4970.10863839153975793No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4600.10055062396033933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)