FastQCFastQC Report
Wed 8 May 2024
EGAF00007960890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459950
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC15520.3374279813023155No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT14910.32416567018154147No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14310.31112077399717364No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT12620.2743776497445375No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12260.2665507120339167No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11830.2572018697684531No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11360.24698336775736493No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11190.2432873138384607No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9520.2069790194586368No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9330.20284813566692034No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT8780.1908903141645831No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8370.18197630177193175No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8120.17654092836177845No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG7200.1565387542124144No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6880.1495814762474182No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6840.1487118165017937No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6540.14218936840960975No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG6240.1356669203174258No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5850.1271877377975867No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5760.1252310033699315No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5700.12392651375149474No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5430.11805631046852919No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5290.11501250135884335No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5250.11414284161321883No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4850.10544624415697358No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4670.10153277530166323No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG4620.10044570061963257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)