FastQCFastQC Report
Wed 8 May 2024
EGAF00007960892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448819
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC15390.34289992179475465No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT14180.3159402788206382No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA13420.29900694934929223No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12220.272270113341904No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT12150.2707104645748063No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11640.2593473092716663No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11470.2555595908372863No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10720.2388490683326686No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8930.19896662128831444No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8830.1967385516210321No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT8680.19339644712010856No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8210.1829245196838815No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7630.1700017156136438No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7100.1581929463770473No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6960.15507364884285202No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6880.15329119310902614No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6080.13546663577076729No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5930.13212453126984375No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG5820.12967365463583316No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5720.1274455849685508No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5490.12232102473380138No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5450.12142979686688843No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5410.12053856899997548No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5390.12009295506651901No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5080.11318593909794372No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4810.10717015099628135No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4770.1062789231293684No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4640.10338243256190136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)