FastQCFastQC Report
Wed 8 May 2024
EGAF00007960893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448819
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26920.5997963544324104No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24820.5530068914194809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23150.5157981279758656No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC15470.34468237752858055No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG13580.30257186081694404No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT12620.2811823920110334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12490.27828590144356635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12180.271378885474991No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC12000.2673683600738828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10520.2343929289981039No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8910.19852100735485798No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC8600.19161399138628266No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8130.18114206395005558No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG7640.17022452258037205No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7180.15997540211087322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6860.15284557917556965No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG6780.15106312344174377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6530.14549294927353787No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6090.1356894427374955No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5680.12655435710163784No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5510.12276663866725784No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5470.12187541080034492No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5330.11875611326614961No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5030.11207190426430255No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10962102763029194No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4750.10583330919591194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)