FastQCFastQC Report
Wed 8 May 2024
EGAF00007960894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461029
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC16350.354641465070527No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14440.31321240095525443No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT13540.2936908524192621No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT12480.2706988063657601No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12370.26831283932247213No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12220.2650592478998068No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11990.26007040771838646No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10970.23794598604426187No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9450.20497625962791927No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9210.19977051335165466No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT8750.18979283298881414No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8220.17829680996206312No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8110.17591084291877515No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG7140.15487095171887233No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7080.1535695151498062No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6890.14944829934776338No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6640.1440256469766544No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6020.13057746909630413No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5990.12992675081177107No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG5830.1264562532942613No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5780.1253717228200395No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5560.12059978873346362No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5100.11062210837062311No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4930.106934704758269No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4870.10563326818920284No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG4730.10259658286138182No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4700.10194586457684875No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT4650.10086133410262695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)