FastQCFastQC Report
Wed 8 May 2024
EGAF00007960895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461029
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27830.6036496619518512No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT26260.5695954050612868No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC16620.3604979296313247No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14670.3182012411366747No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12700.27547074045233594No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT12540.2720002429348262No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12520.27156643074513753No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC12410.26918046370184956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10830.23490930071644084No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG9320.2021564803949426No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8640.18740686594552622No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC8480.18393636842801644No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7790.16896984788375569No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG7710.1672345991250008No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7240.15704001266731593No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG7010.15205117248589567No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6770.14684542620963106No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5870.12732387767363876No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5760.1249379106303508No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5540.12016597654377491No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5400.11712929121595389No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5170.11214045103453361No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5100.11062210837062311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5100.11062210837062311No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4940.10715161085311335No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4930.106934704758269No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG4720.10237967676653746No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4710.1021627706716931No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC4650.10086133410262695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)