FastQCFastQC Report
Wed 8 May 2024
EGAF00007960896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451502
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC15260.3379829989678894No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT14170.31384135618446873No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA14050.3111835606486793No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12150.26910179799867995No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT11640.2578061669715749No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11520.25514837143578545No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11230.24872536555762764No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10700.23698676860789103No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9930.21993258058657544No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT9430.20885843252078617No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9260.2050932221784178No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8420.18648865342789178No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7700.1705418802131552No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7430.164561840257629No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6760.14972248184947132No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6750.14950099888815552No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6130.13576905528657682No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5750.12735270275657692No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5630.12469490722078751No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG5570.12336600945289278No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5570.12336600945289278No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5300.11738596949736656No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5290.11716448653605077No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4990.11051999769657721No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4950.10963406585131406No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4690.10387550885710363No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4630.1025466110892089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)