FastQCFastQC Report
Wed 8 May 2024
EGAF00007960897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451502
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26900.5957891659394643No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25600.5669963809684121No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20790.46046307657551905No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC15320.3393118967357841No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG14230.3151702539523634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13260.29368640670473223No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT13010.28814933267183757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11850.26245730915920634No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC11750.2602424795460485No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10930.2420808767181541No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG9220.20420729033315466No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC9080.20110652887473365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8150.18050861347236558No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7510.16633370394815528No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG7420.1643403572963132No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7350.1627899765671027No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6990.15481658995973438No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG6560.1452928226231556No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5820.12890308348578744No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5630.12469490722078751No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5370.11893635022657707No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5220.11561410580684028No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5180.11472817396157714No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4920.1089696169673667No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4830.10697627031552462No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4590.10166067924394576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)