FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455944
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA20300.4452301159791554No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG18040.39566262523467793No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9890.21691260330215992No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9760.21406137595845104No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9520.20879757163160387No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7440.16317793413226184No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7250.1590107557068412No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6660.1460705700700086No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6650.14585124488972329No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGG6610.1449739441685821No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6570.14409664344744091No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6410.14058744056287614No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6380.13992946502202025No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT6290.13795553839945257No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6030.1322530837120348No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5710.12523467794290527No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5360.11755829663291983No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC4970.1090046146017932No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4580.10045093257066656No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4570.10023160739038128No Hit

[OK]Adapter Content

Adapter graph