FastQCFastQC Report
Wed 8 May 2024
EGAF00007960899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455944
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG44360.9729264997455828No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13370.2932377660414437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12560.27547242643833453No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10590.2322653659221308No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9760.21406137595845104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7810.1712929658028179No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7500.16449388521397365No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6660.1460705700700086No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG6650.14585124488972329No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCCGT6560.14387731826715563No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6440.14124541610373204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6440.14124541610373204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6250.13707823767831137No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG6220.13642026213745548No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6150.13488498587545839No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5660.12413805204147876No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5400.11843559735406103No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5140.11273314266664328No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4890.10725001315951081No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4850.10637271243836963No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4800.10527608653694313No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG4770.10461811099608724No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4750.10417946063551664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)