FastQCFastQC Report
Wed 8 May 2024
EGAF00007960900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441900
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18880.4272459832541299No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17920.4055216112242589No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9510.2152070604209097No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9300.21045485403937544No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9250.2093233763294863No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7150.16180131251414348No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6650.15048653541525234No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6600.1493550577053632No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6530.14777098891151844No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6310.14279248698800634No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6210.14052953156822812No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT6140.13894546277438335No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5960.13487214301878253No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5910.13374066530889342No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5820.131704005431093No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGG5740.12989364109527043No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC5190.11744738628649015No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4440.10047522063815342No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4420.10002262955419777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)