FastQCFastQC Report
Wed 8 May 2024
EGAF00007960901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441900
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG43790.9909481783208871No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22370.5062231274043901No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13730.31070377913555103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11830.2677076261597646No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9760.2208644489703553No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9560.2163385381307988No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6980.15795428830052047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6650.15048653541525234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6520.14754469336954062No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG6440.14573432903371802No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG6190.14007694048427244No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6110.13826657614844987No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5970.13509843856076034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5920.13396696085087123No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5720.12944105001131476No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCCGT5690.1287621633853813No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5450.12333107037791355No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5290.11971034170626838No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG4890.11065852002715548No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4600.1040959493097986No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4440.10047522063815342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)