FastQCFastQC Report
Wed 8 May 2024
EGAF00007960902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458319
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA19940.4350681512221837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG18040.3936123093304009No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10200.22255241436641293No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9690.21142479364809227No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9410.2053155116850927No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7620.1662597448502026No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7360.16058684017027441No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7240.15796857647184603No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6730.14684095575352538No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6560.1431317488474185No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6510.14204080563974No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6470.14116805107359723No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT6420.1400771078659187No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6350.13854978737516882No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGG5780.126113034807634No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5730.12502209159995548No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC5380.11738548914620602No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4690.1023304728802428No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4590.10014858646488581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)