FastQCFastQC Report
Wed 8 May 2024
EGAF00007960903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458319
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG46051.0047586942718936No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14420.31462802109447785No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13040.2845179885625514No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10000.21818864153569895No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9980.21775226425262756No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8000.17455091322855915No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7820.17062351768091655No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6630.14465906933816838No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6560.1431317488474185No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG6550.1429135602058828No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG6380.1392043532997759No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6280.13702246688441894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6150.13418601454445483No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6100.13309507133677637No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCCGT5850.12764035529838388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5680.12393114839227701No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5580.12174926197692001No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5270.11498541408931334No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG5200.11345809359856346No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5020.10953069805092086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4870.10625786842788539No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4860.10603967978634968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)