FastQCFastQC Report
Wed 8 May 2024
EGAF00007960904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446414
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA19350.4334541479433888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17140.38394853208008706No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9970.22333528966385466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8970.20093455850398956No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8740.1957823903372206No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7470.16733346176419198No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7420.16621342520619875No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6830.15299699382187834No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6680.1496368841478986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6590.14762081834351073No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6340.14202063555354447No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6170.1382125112563674No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT6160.13798850394476875No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6040.13530041620558494No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5930.13283633577799978No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGG5750.12880420416922408No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC5200.1164838020312983No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4900.10976358268333877No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4710.10550744376296442No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4540.10169931946578736No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4500.10080329021939277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)