FastQCFastQC Report
Wed 8 May 2024
EGAF00007960905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446414
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG45001.0080329021939276No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21010.47063936166876486No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14000.3136102362381108No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12190.27306491283875506No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10390.23274359675099793No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9110.20407066086637068No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7680.17203761530776365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7670.171813607996165No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6560.14694879640871478No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6480.1451567379159256No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6270.14045258437235392No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6250.14000456974915662No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG6160.13798850394476875No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG6130.1373164820099728No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6060.13574843082878224No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCCGT5800.12992424072721734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5630.12611611643004028No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5580.12499607987204703No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG5020.1124516704225226No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5000.1120036557993253No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4770.10685148763255634No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4630.10371538527017522No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)